Job Description

Your Job:

Microorganisms in the gut microbiome play a key role in health and disease, but their behavior in complex, dynamic microenvironments is still poorly understood. Within a Helmholtz collaboration, we are building a high-throughput single-cell analysis platform that combines microfluidics, advanced imaging and AI-based analysis to study gut microbial consortia.
You will drive the development of the next-generation image analysis and control framework for microfluidic live-cell analytics in close collaboration with partners at HZI, Helmholtz Munich and HHU.

Your tasks in detail:

  • Establish deep-learning–based segmentation, species classification and lineage tracking workflows for multi-species time-lapse data

  • Optimise models and pipelines for real-time performance, enabling adaptive imaging and feedback

  • Develop active learning and retraining pipelines to adapt to new consortia

  • Implem...

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